Holophagae - Misplaced Pages

Class of bacteria

Holophagae
Scientific classification
Domain:	Bacteria
Phylum:	Acidobacteriota
Class:	Holophagae Fukunaga et al. 2008
Type genus
Holophaga Liesack et al. 1995
Orders
Acanthopleuribacterales Holophagales Thermotomaculales
Synonyms
"Holophagia" Oren, Parte & Garrity 2016

Holophagae is a class of Acidobacteriota.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature and the National Center for Biotechnology Information (NCBI). Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny

16S rRNA based LTP_10_2024

120 marker proteins based GTDB 09-RS220

Order 6-4

Order 6-3

Order 6-2

Thermotomaculales

	Acanthopleuribacterales

	Holophagales

Holophagales	Holophagaceae

Thermotomaculales	Thermotomaculaceae

Acanthopleuribacterales	Acanthopleuribacteraceae

Thermotomaculales	Thermotomaculaceae

Acanthopleuribacterales	Acanthopleuribacteraceae

Holophagales	Holophagaceae

References

^ Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
^ Euzéby JP, Parte AC. "Holophagae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 8, 2022.
Sayers. "Holophagae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi:10.1099/ijsem.0.003062. PMID 30325293. S2CID 53502177.
"The LTP". Retrieved 10 December 2024.
"LTP_all tree in newick format". Retrieved 10 December 2024.
"LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
"GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
"bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
"Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.

Prokaryotes: Bacteria classification

(major groups

Terrabacteria
BV1, BV3, BV5

others	Actinomycetota Acidimicrobiia Actinomycetia "Aquicultoria" Coriobacteriia "Geothermincolia" "Humimicrobiia" Nitriliruptoria Rubrobacteria Thermoleophilia Armatimonadota "Abditibacteriia" Armatimonadia Chthonomonadia Fimbriimonadia "Heboniibacteriia" "Zipacnadia" "Bipolaricaulota" "Bipolaricaulia" Chloroflexota "Caldilineia" Chloroflexia Dehalococcoidia Ktedonobacteria "Limnocylindria" Deinococcota "Deinococcia" "Dormiibacterota" "Dormibacteria" "Sysuimicrobiota" "Sysuimicrobiia" Vulcanimicrobiota "Eudoremicrobiia" Vulcanimicrobiia "Xenobiia"
Cyanoprokaryota	Cyanobacteriota Cyanobacteria "Sericytochromatia" "Vampirovibrionophyceae" "Margulisiibacteriota" "Marinamargulisbacteria" "Riflemargulisbacteria" "Saganbacteria" "Termititenacia"
Firmicutes BV3 Low GC	Bacillota "Bacillia" Bacillota A "Clostridiia" "Thermoanaerobacteria" Thermosediminibacteria Bacillota D "Dethiobacteria" Natranaerobiia "Proteinivoracia" Bacillota E Sulfobacillia Symbiobacteriia Thermaerobacteria Bacillota G "Hydrogenisporia" Limnochordia "Desulfotomaculota" "Carboxydocellia" "Carboxydothermia" "Dehalobacteriia" Desulfitobacteriia Desulfotomaculia "Moorellia" Peptococcia Syntrophomonadia Thermincolia "Halanaerobiaeota" "Halanaerobiia" "Selenobacteria" "Selenomonadia"

CPR group

"Elulota"
- "Elulimicrobia"
"Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"

Thermotogida

Synergistetes	Atribacterota Atribacteria "Phoenicimicrobiia" Synergistota Synergistia
Thermocalda	Caldisericota Caldisericia Coprothermobacterota Coprothermobacteria Dictyoglomerota Dictyoglomeria "Lithacetigenota" "Lithacetigenia" "Thermodesulfobiota" "Thermodesulfobiia" Thermotogota "Thermotogia" "Zhurongbacterota"

Fusobacterida

Fusobacteriota
- Fusobacteriia
"Macinerneyibacteriota"
- "Macinerneyibacteriia"
"Muiribacteriota"
- "Muiribacteriia"
"Rifleibacteriota"
- "Ozemibacteria"
"Walliibacteriota"

Hydrobacteria
BV2, BV4

Clade 1

"Aerophobota"
- "Aerophobia"
"Auribacterota"
- "Ancaeobacteria"
- "Auribacteria"
- "Erginobacteria"
- "Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
- Elusimicrobiia
- Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
- "Omnitrophia"
- "Velamenicoccia"
"Ratteibacteriota"

Spirochaeto
bacteriobiontes

"Babelota"
- "Babeliae"
"Lindowiibacteriota"
Spirochaetota
- "Brevinematia"
- "Brachyspirae"
- "Exilispiria"
- "Leptospiria"
- Spirochaetia

PVC group
(Planctobacteria)

"Abyssubacteria"
Chlamydiota
- Chlamydiia
"Coatesiibacteriota"
"Hinthialibacterota"
- "Hinthialibacteria"
"Hydrogenedentota"
- "Hydrogenedentia"
Fidelibacterota
- Fidelibacteria
Planctomycetota
- "Brocadiia"
- "Phycisphaeria"
- Planctomycetia
- "Uabimicrobiia"
"Poribacteriota"
"Saltatorellota"
- "Saltatorellae"
"Sumerlaeota"
- "Sumerlaeia"
Verrucomicrobiota
- Kiritimatiellia
- Lentisphaeria
- Verrucomicrobiia

FCB group
(Sphingobacteria)

Bacteroidota
- Bacteroidia
- Chlorobiia
- "Ignavibacteriia"
- "Kapaibacteria"
- "Kryptoniia"
- Rhodothermia
Calditrichota
- Calditrichia
"Cloacimonadota"
- "Cloacimonadia"
"Cosmopoliota"
- "Cosmopolitia"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Effluvivivacota"
"Eiseniibacteriota"
"Electryoneota"
- "Electryoneia"
- "Tariuqbacteria"
"Fermentibacterota"
- "Fermentibacteria"
Fibrobacterota
- Chitinivibrionia
- Fibrobacteria
- "Raymondbacteriia"
Gemmatimonadota
- Gemmatimonadia
- "Glassbacteria"
"Heilongiota"
- "Heilongiia"
"Hydrothermota"
- "Hydrothermia"
- "Stahlbacteria"
"Krumholzibacteriota"
- "Krumholzibacteriia"
"Latescibacterota"
- "Handelsmanbacteria"
- "Latescibacteria"
"Marinisomatota"
- "Marinisomatia"
"Tianyaibacteriota"
"Zixiibacteriota"

Proteobacteria
BV2

Aquificida	"Acidulidesulfobacteriota" "Acidulodesulfobacteriia" Aquificota Aquificia Desulfurobacteriia Campylobacterota "Campylobacteria" Desulfurellia "Calescibacteriota" "Calescibacteriia" Chrysiogenota Chrysiogenia "Dadaibacteriota" "Dadabacteria" Deferribacterota "Deferribacteria" Desulfobacterota G Syntrophorhabdia Thermosulfidibacterota Thermosulfidibacteria
Deltaproteobacteria	Bdellovibrionota Bacteriovoracia Bdellovibrionia Oligoflexia "Binatota" "Binatia" "Deferrimicrobiota" "Deferrimicrobiia" "Deferrisomatota" Deferrisomatia "Desulfuromonadota" Desulfuromonadia "Lernaellota" "Lernaellia" "Methylomirabilota" "Methylomirabilia" "Moduliflexota" "Moduliflexia" Myxococcota Myxococcia "Bradymonadia" Polyangiia Nitrospinota Nitrospinia Nitrospirota Nitrospiria Thermodesulfovibrionia SAR324 "Lambdaproteobacteria" "Schekmaniibacteriota" "Tectimicrobiota" "Entotheonellia" "Thermodesulfobacteriota"
others	Acidobacteriota "Acidobacteriia" "Aminicenantia" Blastocatellia "Fischerbacteria" "Guanabaribacteriia" "Holophagia" "Polarisedimenticolia" Thermoanaerobaculia Vicinamibacteria "Canglongiota" "Canglongiia" "Leptospirillaeota" "Leptospirillia" Pseudomonadota "Caulobacteria" "Mariprofundia" Magnetococcia "Pseudomonadia"

others

Source: Bergey's Manual (2001–2012)
Alternative views: Wikispecies

Taxon identifiers
Holophagae	Wikidata: Q18675214 Wikispecies: Holophagae CoL: CM EoL: 11782563 GBIF: 7547422 IRMNG: 11907907 ITIS: 956158 LPSN: holophagae NCBI: 533205 Open Tree of Life: 522757 WoRMS: 564403

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Categories:

Phylogeny

See also

References